Dynamics data of protein 3D structures obtained
by normal mode analysis are collected. An animation of the normal mode
vibrations can be played with a plug-in, Chime. Dynamic domains and
their mutual screw motions defined in the normal mode analysis are also
displayed with Chime. Dynamical properties for each normal mode
vibration and their time averages over all modes, for example,
fluctuations of atom positions, fluctuations of dihedral angles,
and correlations between atomic movements, are also given graphically.
Reference: Hiroshi Wako, Masaki Kato and Shigeru Endo, ProMode: a
database of normal mode analyses on protein molecules with a full-atom
model. (2004) Bioinformatics, 20, 2035-2043.